A molecular dynamics study of the stoichiometric complex formed by poly (alpha, L-glutamate) and octyltrimethylammonium ions in chloroform solution.

We present a molecular dynamics simulation at 300 K in explicit solvent environment of chloroform of the stoichiometric complex formed by poly(alpha,L-glutamate) and octyltrimethylammonium ions. We observed that the alpha-helix conformation of the polypeptide chain remains stable during a 2-ns run. The surfactant ions predominantly adopted an extended conformation that is stabilized by favorable interactions with the organic solvent. Analysis of the organization of the surfactant with respect to the polypeptide chain indicated that each octyltrimethylammonium cation was preferentially bound to more than one carboxylate group. It was found that the most populated arrangement was that with the surfactant cations interacting with two carboxylate groups simultaneously.     

Eigenschaften des Elektronentransportsystem von Mitochondrien des Protisten Acanthamoeba castellanii Neff. I. Zum Einfluß von Hemmstoffen auf verschiedene Akzeptorsysteme, getested mit einer modifizierten Thunbergtechnik

ZUSAMMENFASSUNG. Die Reduktionsgeschwindigkeit künstlicher Elektronenakzeptoren wurde mittels einer modifizierten Thunbergtechnik in Gegenwart isolierter Mitochondrien des Protisten Acanthamoeba castellanii Neff photometrisch gemessen. Die mit verschiedenen Elektronenakzeptoren und Atmungsketteninhibitoren gewonnenen Meßergebnisse erlauben uns folgendes Bild von der Konstitution der Atmungskette zu entwerfen: a) Der Elektronentransport läuft mindestens bis zum Cytochrom b /Coenzym Q-Komplex auf zwei verschiedenen Wegen ab. b) Eine Stimulierung sowohl des Succinat-Jodnitrotetrazolium-chlorid als auch des NADH-Ferricyanid Reduktasekomplexes unter dem Einfluß von Antimycin A läßt vermuten, daß in der Atmungskette dieses Protisten gewisse Nebengleise des Elektronentransports besonders gangbar sind.
SYNOPSIS. The reduction of artificial electron acceptors by isolated mitochondria of Acanthamoeba castellanii was measured by a modified Thunberg technic. The results with different electron acceptors and respiratory chain inhibitors suggest the following scheme for the constitution of the respiratory chain: a) the chain is divided into 2 different sequences, at least up to the cytochrome b /coenzyme Q complex. b) As seen from the stimulation of the succinate-iodonitrotetrazolium chloride and NADH-ferricyanide reductase complexes by antimycin A, certain alternate pathways of electron transport become more important than the normal one.     

Tissue-Characteristic Expression of Mouse Proteome

The mouse is a valuable model organism for biomedical research. Here, we established a comprehensive spectral library and the data-independent acquisition–based quantitative proteome maps for 41 mouse organs, including some rarely reported organs such as the cornea, retina, and nine paired organs. The mouse spectral library contained 178,304 peptides from 12,320 proteins, including 1678 proteins not reported in previous mouse spectral libraries. Our data suggested that organs from the nervous system and immune system expressed the most distinct proteome compared with other organs. We also found characteristic protein expression of immune-privileged organs, which may help understanding possible immune rejection after organ transplantation. Each tissue type expressed characteristic high-abundance proteins related to its physiological functions. We also uncovered some tissue-specific proteins which have not been reported previously. The testis expressed highest number of tissue-specific proteins. By comparison of nine paired organs including kidneys, testes, and adrenal glands, we found left organs exhibited higher levels of antioxidant enzymes. We also observed expression asymmetry for proteins related to the apoptotic process, tumor suppression, and organ functions between the left and right sides. This study provides a comprehensive spectral library and a quantitative proteome resource for mouse studies.     

MHC Class I Immunopeptidome: Past,Present, and Future

In the 35 years since the revelation that short peptides bound to major histocompatibility complex class I and II molecules are the secret of the major histocompatibility complex–restricted nature of T-cell recognition, there has been enormous progress in characterizing the immunopeptidome, the repertoire of peptide presented for immunosurveillance. Here, the major milestones in the journey are marked, the contribution of proteasome-mediated splicing to the immunopeptidome is discussed, and exciting recent findings relating the immunopeptidome to the translatome revealed by ribosome profiling (RiboSeq) is detailed. Finally, what is needed for continued progress is opined about, which includes the infusion of talented young scientists into the antigen-processing field, currently undergoing a renaissance; thanks in part to the astounding success of T-cell–based cancer immunotherapy.     

Genome-wide CRISPR Screens Reveal Host Factors Critical for SARS-CoV-2 Infection

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Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma

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Monitoring the Assembly of a Secreted Bacterial Virulence Factor Using Site-specific Crosslinking

This article describes a method to detect and analyze dynamic interactions between a protein of interest and other factors in vivo. Our method is based on the amber suppression technology that was originally developed by Peter Schultz and colleagues¹. An amber mutation is first introduced at a specific codon of the gene encoding the protein of interest. The amber mutant is then expressed in E. coli together with genes encoding an amber suppressor tRNA and an amino acyl-tRNA synthetase derived from Methanococcus jannaschii. Using this system, the photo activatable amino acid analog p-benzoylphenylalanine (Bpa) is incorporated at the amber codon. Cells are then irradiated with ultraviolet light to covalently link the Bpa residue to proteins that are located within 3-8 Å. Photocrosslinking is performed in combination with pulse-chase labeling and immunoprecipitation of the protein of interest in order to monitor changes in protein-protein interactions that occur over a time scale of seconds to minutes. We optimized the procedure to study the assembly of a bacterial virulence factor that consists of two independent domains, a domain that is integrated into the outer membrane and a domain that is translocated into the extracellular space, but the method can be used to study many different assembly processes and biological pathways in both prokaryotic and eukaryotic cells. In principle interacting factors and even specific residues of interacting factors that bind to a protein of interest can be identified by mass spectrometry.     

Automated Food-Procuring Movement-Related Neuronal Activity in the Basolateral Amygdala of the Rat

We studied the impulse activity of neurons of the basal and lateral amygdalar nuclei generated when experimental animals (rats) performed fast stereotyped food-procuring movements by the forelimb. Within the basolateral amygdala, there are neurons whose activity is related to different stages of getting off the food, and according to the characteristics of their spiking these neurons should be divided into a number of subpopulations. Activation forestalling the movement initiation by 0.5-1.0 sec was observed in most neurons of the basolateral amygdala; this is considered a manifestation of excitation related to a motivation component of the food-procuring behavior. Activation of amygdalar neurons following movement initiation can result from generation in this structure of additional excitation necessary for successful performance of a complete food-procuring motor cycle.     

Nucleotide sequence of psbQ gene for 16-kDa protein of oxygen-evolving complex from Arabidopsis thaliana and regulation of its expression.

The psbQ gene encoding a 16-kDa polypeptide of the oxygen-evolving complex of photosystem II has been isolated from Arabidopsis thaliana and characterized. The gene consists of a 28 nucleotide long leader sequence, two introns and three exons encoding a 223-amino-acid precursor polypeptide. The first 75 amino acids act as a transit peptide for the translocation of the polypeptide into the thylakoid lumen. Expression studies show that the gene is light-inducible and expresses only in green tissues with high steady-state mRNA levels in leaves. Using this gene as a probe, restriction fragment length polymorphism between two ecotypes, Columbia and Estland, has also been detected.     

基于价值评估的黄山市生境质量时空演变特征分析

评价与分析特定区域的生境质量及其时空变化对其生态安全格局构建、可持续发展意义重大。本文以典型旅游城市黄山市为研究区，综合生态系统服务价值评价模型、基于NPP与NDVI的生境质量指数评价、InVEST生境质量评价模型、空间分析等模型与方法对黄山市1987-2017年生境质量进行研究。结果表明：（1）1987-2007年，黄山市生境质量总值持续下降，2017出现回升，但生境受到的威胁仍增加，生境最优区为北部太平湖区域，生境质量低值主要分布在各县区主城区；生境质量栅格等级变化以4等级转变为3等级为主。（2）1987-2017年，黄山市105个乡镇（街道）中有84个乡镇（街道）生境质量有所下降，主要分布在东部区域；北部环太平湖区域的乡镇为生境质量"高高"型聚集区及热点区域，屯溪区、徽州区南部、歙县、休宁县主城区的各镇为生境质量"低低"型聚集区及冷点区域。（3）黄山市城市发展对生境质量影响较大，大体上距离城市中心点越近的圈层，生境质量越差；距离黄山市旅游中心点10-20、30-40、40-50 km的3个圈层形成生境质量低值点，为旅游与城区互助发展的结果；黄山市旅游与生境质量空间分布相关性较强，旅游设施、景区核密度越高，低等级生境质量占比越高。